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jupyter-mcp-server

datalayer · datalayer/jupyter-mcp-server

Connects AI agents to Jupyter Notebooks via an MCP server, enabling agents to manage and execute code in notebooks, locally or in the cloud.

🪐 🔧 Model Context Protocol (MCP) Server for Jupyter.

1.3k stars203License: BSD-3-ClauseUpdated 13 days ago0 opens

Preview

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What you can do with it

  • Allow a Claude Code agent to execute Python code in a Jupyter Notebook to analyze data.
  • Use an AI agent to manage and orchestrate data science workflows within Jupyter.
  • Have an agent debug Jupyter Notebook cells and suggest improvements for data processing.

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From the README

🪐🔧 Jupyter MCP Server

An MCP server developed for AI to connect and manage Jupyter Notebooks in real-time — and scale your Code Sandbox from local to the cloud (Datalayer, Kaggle, Google Colab, Modal, Daytona, E2B, CoreWeave, Cloudflare...)

Developed by Datalayer - Join our Discord

📖 Documentation  ·  🔧 Tools  ·  💬 Community

No process to run. Datalayer now hosts this server for you at https://mcp.datalayer.run/mcp — one endpoint for every agent and every notebook. Sign in from your browser, approve what the agent may do, and your work keeps running on the server after the agent disconnects.

→ Hosted Jupyter MCP Server

One command to connect Claude Code, with /datalayer:notebook, /datalayer:run and /datalayer:status on top:

/plugin marketplace add datalayer/jupyter-mcp-server
/plugin install datalayer

→ Datalayer plugin for Claude Code


Free and open source, BSD 3-Clause — point it at any Jupyter you already run, local or JupyterHub, no account needed.

Built and maintained by Datalayer, where the same server drives always-on Notebooks with GPU Code Sandboxes and durable execution — so your agent keeps working on your data when your laptop does not.


No token to copy and paste. An agent that meets this server unauthenticated is told where to authenticate, opens your browser, and you sign in to Datalayer as yourself. The agent never sees your password — it receives a token scoped to what you approved, and you can disconnect one agent without touching the others.

What each agent may do is two separate decisions: the scopes you approve (notebooks:read, notebooks:write, code:execute, data:read) say what kind of operation it may perform, and your own Datalayer permissions still say which notebooks it may touch. An agent can never reach a notebook you cannot.

Personal access tokens keep working, and remain the simpler path for a CLI or a script. → OAuth and identity

Pin code-sandboxes to match your jupyter-mcp-server. The sandbox variant jupyter was renamed to jupyter-server in code-sandboxes 1.1.1, and the two packages have to agree on the name.

Your jupyter-mcp-serverInstall
>= 1.5.0code-sandboxes >= 1.1.1
< 1.5.0code-sandboxes <= 1.0.9
# On 1.5.0 or later
pip install "jupyter-mcp-server>=1.5.0" "code-sandboxes>=1.1.1"

# Staying on an earlier jupyter-mcp-server
pip install "jupyter-mcp-server<1.5.0" "code-sandboxes<=1.0.9"

An older server with a newer code-sandboxes installs cleanly and then fails on the first execution with Unknown sandbox variant: jupyter. → Release notes


Jupyter MCP Server 2 runs on the MCP Python SDK 2 (mcp>=2,<3), the SDK's first major release. Nothing changes in how you start or configure the server, in the tools, or for the MCP clients connecting to it — the protocol is negotiated with each client as before. What changes is the Python environment:

Your jupyter-mcp-servermcp SDK
>= 2.0.0mcp >= 2
< 2.0.0mcp < 2

Both are pinned in the package, so pip sorts it out; an environment holding another package that still pins mcp<2 has to stay on jupyter-mcp-server<2 until that package moves. Writing an extension or a custom token verifier against the SDK? See the release notes for the renamed imports.


--provider is now --document-provider (env var PROVIDER → DOCUMENT_PROVIDER).

It only ever chose where the notebook documents live — jupyter for the collaboration API of a Jupyter Server, datalayer for the Datalayer spacer — while the old name and its help text suggested it also chose where code runs. Execution is picked separately, with --sandbox-variant (jupyter-server, datalayer, daytona, e2b, coreweave, cloudflare, kaggle, google-colab, monty, modal).

Nothing breaks in v1.3.2: --provider is still accepted as an alias, PROVIDER is still read, and a /connect payload carrying "provider" is still understood. Move to the new names when convenient — the old ones are deprecated, not removed.


📖 Table of Contents

🚀 Key Features

  • ⚡ Real-time control: Instantly view notebook changes as they happen.
  • 🔁 Smart execution: Automatically adjusts when a cell run fails thanks to cell output feedback.
  • 🧠 Context-aware: Understands the entire notebook context for more relevant interactions.
  • 📊 Multimodal support: Support different output types, including images, plots, and text.
  • 📚 Multi-notebook support: Seamlessly switch between multiple notebooks.
  • 🎨 JupyterLab integration: Enhanced UI integration like automatic notebook opening.
  • 🤝 MCP-compatible: Works with any MCP client, such as Claude Desktop, Cursor, Windsurf, and more.
  • 🔍 Observability: Buil
View source on GitHub